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Copies of many of the publications listed below are now available to be downloaded. Each paper is provided in two formats:
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Books, Monographs

The title page and table of contents for the books can be viewed by following this link.

  1. Floudas C.A. and P.M. Pardalos, "A Collection of Test Problems for Constrained Global Optimization Algorithms", Lecture Notes In Computer Science, Eds. G. Goos and J. Hartmanis, Vol. 455, Springer-Verlag (1990).
  2. Floudas C.A. and P.M. Pardalos, Eds., "Recent Advances In Global Optimization", Princeton University Press (1992).
  3. Floudas C.A., Ed. "Optimization In Chemical Engineering", Special Issue of Annals of Operations Research, Vol. 42, (1993).
  4. Floudas C.A. and P.M. Pardalos, Eds., "State of the Art In Global Optimization : Computational Methods and Applications", Kluwer Academic Publishers, (1996).
  5. Floudas C.A., "Nonlinear and Mixed-Integer Optimization : Fundamentals and Applications", Oxford University Press, (1995).
  6. Floudas C.A., P.M. Pardalos, C.S. Adjiman, W.R. Esposito, Z. Gumus, S.T. Harding, J.L. Klepeis, C.A. Meyer, and C.A. Schweiger, "Handbook of Test Problems for Local and Global Optimization", Kluwer Academic Publishers, (1999).
  7. Floudas C.A., "Deterministic Global Optimization: Theory, Methods and Applications", Kluwer Academic Publishers, (2000).
  8. Floudas C.A. and P.M. Pardalos, "Optimization in Computational Chemistry and Molecular Biology : Local and Global Approaches", Kluwer Academic Publishers, (2000).
  9. Floudas C.A. and P.M. Pardalos, Eds., "Encyclopedia of Optimization", Kluwer Academic Publishers, (2001). (News)
  10. Floudas C.A. and P.M. Pardalos, Eds., "Frontiers in Global Optimization", Kluwer Academic Publishers, (2003).
  11. Floudas C.A. and R. Agrawal, Eds., "Sixth International Conference on Foundations of Computer-Aided Process Design: Discovery Through Product and Process Design", OmniPress, (2004).
  12. Floudas C.A. and P.M. Pardalos, Eds., "Encyclopedia of Optimization, Second Edition" (PDF (22MB)), Springer, (2008).

Chapters in Books

  1. Floudas C.A. and V. Visweswaran (PostScript (427K), PDF (413K)), "Quadratic Optimization", Handbook of Global Optimization (R.Horst and P.M. Pardalos, Editors), Kluwer Academic Publishers, pp. 217-270 (1994).
  2. Visweswaran V. and C.A. Floudas (PostScript (194K), PDF (163K)), "New Formulations and Branching Strategies for the GOP Algorithm", Global Optimization in Chemical Engineering, (I.E. Grossmann, Editor), Kluwer Academic Publishers, Chapter 3, pp. 75-100 (1996).
  3. Visweswaran V. and C.A. Floudas (PostScript (213K),PDF (204K)), "Computational Results for an Efficient Implementation of the GOP Algorithm and its Variants", Global Optimization in Chemical Engineering, (I.E. Grossmann, Editor), Kluwer Academic Publishers, Chapter 4, pp. 111-153 (1996).
  4. Floudas, C.A. (PostScript (603K), PDF (468K)), "Deterministic Global Optimization in Design, Control, and Computational Chemistry", In Proceedings: Large Scale Optimization with Applications. Part III: Optimal Design and Control, (L.T. Biegler, A. Conn, L. Coleman, and F. Santosa, Editors), Springer-Verlag, Vol. 93, pp. 129-184 (1997).

Refereed Journal and Proceedings Publications

  1. Floudas C.A. and I.E Grossmann, "A New Approach For Evaluating Flexibility In Chemical Process Design", Proceedings of Process Systems Engineering Conference, PSE'85, pp. 619-631, Cambridge, England, 1985.
  2. Floudas C.A., A.R. Ciric and I.E. Grossmann, "Automatic Synthesis of Optimum Heat Exchanger Network Configurations", AIChE Journal, 32, 276 (1986).
  3. Floudas C.A. and I.E. Grossmann, "Synthesis of Flexible Heat Exchanger Networks for Multiperiod Operation", Computers and Chemical Engineering, Vol. 10, No. 2, pp. 153-168 (1986).
  4. Floudas C.A. and I.E. Grossmann, "Automatic Synthesis of Flexible Heat Exchanger Network Configurations for Multiperiod Operation", ASME, Advanced Energy Systems, AES-Vol. 2-1, pp. 75-92 (1986).
  5. Floudas C.A., I.E. Grossmann and R. Wood, "Automatic Synthesis and Optimization of Heat Exchanger Networks", Proceedings of Chemical Engineering Conference, CHEMECA, Paper No. 5a (1986).
  6. Floudas C.A. and I.E. Grossmann, "Automatic Synthesis of Multiperiod Heat Exchanger Network Configurations", Computers and Chemical Engineering, Vol. 11, No. 2, pp. 123-143 (1987).
  7. Floudas C.A. and I.E. Grossmann, "Synthesis of Flexible Heat Exchanger Networks", Proceedings of Chemical Engineering Fundamentals : The Use of Computers in Chemical Engineering, CEF'87, pp. 711-717 (1987).
  8. Floudas C.A. and I.E. Grossmann, "Synthesis of Flexible Heat Exchanger Networks With Uncertain Flowrates and Temperatures", Computers and Chemical Engineering, Vol. 11, No. 4, pp. 319-336 (1987).
  9. Grossmann I.E. and C.A. Floudas, "Active Constraint Strategy for Flexibility Analysis of Chemical Processes", Computers and Chemical Engineering, Vol. 11, No. 6, pp. 675-693 (1987).
  10. Floudas C.A., "Separation Synthesis of Multicomponent Feed Streams into Multicomponent Product Streams", AIChE Journal, 33, No. 4, pp. 540-551 (1987).
  11. Paules G.E. IV and C.A. Floudas, Design of Multiperiod Distillation Sequences, Proceedings of Computer-Aided Process Operations, FOCAPO-87, Eds. Reklaitis and Spriggs, Elsevier, pp. 647-653 (1987).
  12. Paules G.E. IV and C.A. Floudas, "Synthesis of Flexible Distillation Sequences for Multiperiod Operation", Computers and Chemical Engineering, Vol. 12, No. 4, pp.267-280 (1988).
  13. Floudas C.A. and G.E. Paules IV, "A Mixed-Integer Nonlinear Programming Formulation for the Synthesis of Heat-Integrated Distillation Sequences", Computers and Chemical Engineering, Vol. 12, No. 6, pp. 531-546 (1988).
  14. Floudas C.A. and S.H. Anastasiadis, "Synthesis of General Distillation Sequences with Several Multicomponent Feeds and Products", Chemical Engineering Science, Vol. 43, No. 9, pp. 2407-2419 (1988).
  15. Georgiou A. and C.A. Floudas, "Determination of Generic Rank of Structural Matrices", Proceedings of the 22nd Conference on Information Sciences and Systems, pp. 585-590, Princeton University, (1988).
  16. Ciric A.R. and C.A. Floudas, "Optimization Model for Retrofitting Heat Exchanger Networks", I.Ch.E. Symposium Series No. 109, pp. 61-75 (1988).
  17. Floudas C.A., "Multicomponent Multi-feed Multi-product Synthesis of Distillation Sequences", I.Ch.E. Symposium Series No. 109, pp. 137-159 (1988).
  18. Floudas C.A. and A.R. Ciric, "Global Optimum Issues on Heat Exchanger Network Synthesis", Proceedings of Process System Engineering, PSE'88, pp. 104-110 (1988).
  19. Paules G.E. IV and C.A. Floudas, "APROS : Algorithmic Development Methodology For Discrete-Continuous Optimization Problems", Operations Research Journal, Vol. 37, No. 6, pp. 902-915 (1989).
  20. Ciric A.R. and C.A. Floudas, "A Retrofit Approach of Heat Exchanger Networks", Computers and Chemical Engineering, Vol. 13, No. 6, pp.703-715 (1989).
  21. Georgiou A. and C.A. Floudas, "An Optimization Model for the Generic Rank Determination of Structural Matrices", International Journal of Control, Vol. 49, No. 5, pp. 1633-1644 (1989).
  22. Ciric A.R. and C.A. Floudas, "Retrofitting Heat Exchanger Networks : A Two-stage Approach", Design Theory 1988, Editors S.L. Newsome, W.R. Spillers and S. Finger, Springer-Verlag, pp. 265-286 (1989).
  23. Georgiou A. and C.A. Floudas, "Structural Analysis and Synthesis of Feasible Control Systems - Theory and Applications", Chemical Engineering Research and Design, Vol. 67, pp. 600-618, November (1989).
  24. Floudas C.A., A. Aggarwal and A.R. Ciric, "Global Optimum Search for Nonconvex NLP and MINLP Problems", Computers and Chemical Engineering, Vol. 13, No. 10, pp. 1117-1132 (1989).
  25. Floudas C.A. and A.R. Ciric, "Strategies for Overcoming Uncertainties In Heat Exchanger Network Synthesis", Computers and Chemical Engineering, Vol. 13, No. 10, pp.1133-1152 (1989).
  26. Floudas C.A., A. Aggarwal and A.R. Ciric, "Global Optimum Search In Non-convex Design Problems", Proceedings of NSF Engineering Design Research Conference, pp. 435-451, UMASS, Amherst, June (1989).
  27. Kokossis A.C. and C.A. Floudas, "Optimal Synthesis of Reactor Networks", I.Ch.E. Symposium Series No. 114, Computer- Integrated Process Engineering, pp. 261-273 (1989).
  28. Georgiou A. and C.A. Floudas, "Simultaneous Process Synthesis and Control : Minimization of Disturbance Propagation In Heat Recovery Systems", Foundations of Computer-Aided Process Design, Eds. Siirola, Grossmann and Stephanopoulos, Elsevier, pp. 435-450 (1990).
  29. Ciric A.R. and C.A. Floudas, "A Mixed-Integer Nonlinear Programming Model For Retrofitting Heat Exchanger Networks", Industrial and Engineering Chemistry Research, Vol. 29, pp. 239-251 (1990).
  30. Ciric A.R. and C.A. Floudas, "Application of the Simultaneous Match-Network Optimization Approach to the Pseudo-Pinch Problem", Computers and Chemical Engineering, Vol. 14, No. 3, pp. 241-250 (1990).
  31. Kokossis A.C. and C.A. Floudas, "Optimization of Complex Reactor Networks: I-Isothermal Operation", Chemical Engineering Science, Vol. 43, No. 3, pp. 595-614 (1990).
  32. Ciric A.R. and C.A. Floudas, "A MINLP Model For Retrofitting Heat Exchanger Networks", Proceedings of NSF Design and Manufacturing Systems Conference, Arizona State University, January (1990).
  33. Georgiou A. and C.A. Floudas, "Structural Properties of Large Scale Systems", International Journal of Control, Vol. 51, No.1, pp. 169-187 (1990) .
  34. Aggarwal A. and C.A. Floudas, "Optimal Synthesis of Nonsharp Separation Sequences", Computer Applications In Chemical Engineering, Editors Bussemaker and Iedema, Elsevier, pp. 243-248 (1990).
  35. Psarris P. and C.A. Floudas, "A General Framework for the Enhancement of Dynamic Operability in MIMO Systems with Time Delays", Proceedings of 23rd Conference on Information Sciences and Systems, Princeton University, (1990).
  36. Aggarwal A. and C.A. Floudas, "Synthesis of General Separation Sequences - Nonsharp Separations", Computers and Chemical Engineering, Vol. 14, No. 6, pp. 631-653(1990).
  37. Floudas C.A. and A. Aggarwal, "A Decomposition Approach for Global Optimum Search In The Pooling Problem", Operations Research Journal On Computing, Vol. 2, No. 3, pp. 225-234(1990).
  38. Ciric A.R. and C.A. Floudas, "A Comprehensive Optimization Model For The Retrofit Of Heat Recovery Networks", Journal of Heat Recovery Systems and CHP, Vol. 10, No. 4, pp. 407-422(1990) .
  39. Aggarwal A. and C.A. Floudas, "A Decomposition Approach for Global Optimum Search in QP, NLP and MINLP problems", Annals of Operations Research, Special Volume On Computational methods In Global Optimization (Eds. P.M. Pardalos and J.B. Rosen), Vol. 25, (1990).
  40. Psarris P. and C.A. Floudas, "Improving Dynamic Operability in MIMO Systems with Time Delays", Chemical Engineering Science, Vol. 45, No. 12, pp. 3505-3524(1990).
  41. Floudas C.A. and V. Visweswaran (PostScript (340K), PDF (315K)), "A Global Optimization Algorithm (GOP) for Certain Classes of Nonconvex NLPs : I. Theory", Computers and Chemical Engineering, Vol. 14, No. 12, pp. 1397-1417(1990).
  42. Visweswaran V. and C.A. Floudas (PostScript (304K), PDF (266K)), "A Global Optimization Algorithm (GOP) for Certain Classes of Nonconvex NLPs : II. Applications of Theory and Test Problems", Computers and Chemical Engineering, Vol. 14, No. 12, pp. 1417-1434(1990).
  43. Kokossis A.C. and C.A. Floudas, "Synthesis of Isothermal Reactor-Separator-Recycle Systems", Chemical Engineering Science, Vol. 46, No. 5/6, pp. 1361-1383(1991).
  44. Ciric A.R. and C.A. Floudas, "Heat Exchanger Network Synthesis Without Decomposition", Computers and Chemical Engineering, Vol. 15, No. 6, pp. 385-396(1991).
  45. Psarris P. and C.A. Floudas, "Dynamic Operability of MIMO Systems with Time Delays and Transmission Zeroes. I. Assessment", Chemical Engineering Science, Vol. 46, No. 10, pp.2691-2707(1991).
  46. Psarris P. and C.A. Floudas, "Dynamic Operability of MIMO Systems with Time Delays and Transmission Zeroes. II. Enhancement", Chemical Engineering Science, Vol. 46, No. 10, pp.2709-2728(1991).
  47. Visweswaran V. and C.A. Floudas, "A Global Optimization Algorithm (GOP) For Certain Classes of Nonconvex NLPs - III. New Properties For Improved Computational Performance", Proceedings of Process Systems Engineering, PSE'91, pp. I.6.1-I.6.17(1991).
  48. Psarris P. and C.A. Floudas, "Interaction of Process Design and Control : Dynamic Operability in Multivariable Time Delay Systems", Proceedings of Process Systems Engineering, PSE'91, pp. II.8.1-II.8.17 (1991).
  49. Visweswaran V. and C.A. Floudas, "Global Optimization of Problems with Polynomial Functions In One Variable", Recent Advances In Global Optimization, Princeton University Press, pp. 165-200(1992).
  50. Paules G.E. IV and C.A. Floudas, "Stochastic Programming In Process Synthesis : A two-Stage Model with MINLP Recourse for Multiperiod Heat-Integrated Distillation Sequences", Computers and Chemical Engineering, 16, 3, pp. 189-210(1992).
  51. Aggarwal A. and C.A. Floudas, "Synthesis of Heat Integrated Nonsharp Distillation Sequences", Computers and Chemical Engineering, Vol. 16, No. 2, pp. 89-108(1992).
  52. Visweswaran V. and C.A. Floudas (PostScript (274K), PDF (265K)), "Unconstrained and Constrained Global Optimization of Polynomial Functions In One Variable", Journal of Global Optimization, Vol. 2, No. 1, pp. 73-99(1992).
  53. Maranas C.D. and C.A. Floudas (PostScript (238K), PDF (219K)), "A Global Optimization Approach for Lennard-Jones Microclusters", Journal of Chemical Physics, Vol. 97, November 15, pp. 7667-7678 (1992).
  54. Luyben M.L. and C.A. Floudas, "A Multi-objective Optimization Approach for the Interaction of Design and Control", Proceedings of the IFAC Meeting on Design and Control, pp. 101-107 (1992).
  55. Floudas C.A. and V. Visweswaran (PostScript (240K), PDF (183K)), "A Primal-Relaxed Dual Global Optimization Approach", Journal of Optimization, Theory, and its Applications, Vol. 78, No. 2, pp. 187-225(1993).
  56. Visweswaran V. and C.A. Floudas (PostScript (296K), PDF (274K)), "New Properties and Computational Improvement of the GOP Algorithm For Problems With Quadratic Objective Function and Constraints", Journal of Global Optimization, Vol. 3, No. 4, pp. 439-462(1993).
  57. Maranas C.D. and C.A. Floudas, "Global Optimization for Molecular Conformation Problems", Annals of Operations Research, Vol. 42, pp. 85-117 (1993).
  58. Kokossis A.C. and C.A. Floudas,"Stability Issues in Process Synthesis", Computers and Chemical Engineering, Vol. 18, pp. S93-S97 (1993).
  59. Ierapetritou M., E.N. Pistikopoulos, and C.A. Floudas, "Operational Planning Under Uncertainty", Computers and Chemical Engineering, Vol. 18, pp. S553-S557 (1993).
  60. Liu W.B. and C.A. Floudas, "A Remark on the GOP Algorithm for Global Optimization", Journal of Global Optimization, Vol. 3, No. 4, pp. 519-521(1993).
  61. Maranas C.D. and C.A. Floudas, "Global Minimum Potential Energy Conformations of Small Molecules", Journal of Global Optimization, Vol. 4, No. 2, pp. 135-170(1994).
  62. Maranas C.D. and C.A. Floudas, "A Global Optimization Method for Weber's Problem with Attraction and Repulsion", Large Scale Optimization: State of the Art (W.W. Hager, D.W Hearn, and P.M. Pardalos, Editors), Kluwer Academic Publishers, pp. 259-293(1993).
  63. Kokossis A.C. and C.A. Floudas, "Optimization of Complex Reactor Networks-II: Nonisothermal Operation", Chemical Engineering Science, Vol. 49, No. 7, pp. 1037-1051(1994).
  64. Kokossis A.C. and C.A. Floudas, "Stability in Optimal Design : Synthesis of Complex Reactor Networks", AIChE J., Vol. 40, No. 5, pp. 849-861(1994).
  65. Maranas C.D. and C.A. Floudas, "A Deterministic Global Optimization Approach for Molecular Structure Determination", Journal of Chemical Physics, Vol. 100, No. 2, pp. 1247-1261, 15 January (1994).
  66. Maranas C.D., C.A. Floudas and P.M. Pardalos (PostScript (106K), PDF (112K)), "New Results in the Packing of Equal Circles in a Square", Discrete Mathematics, 142, pp. 287-293(1995).
  67. Luyben M.L. and C.A. Floudas, "A Multiobjective Optimization Approach for Analyzing the Interaction of Design and Control, Part 1: Theoretical Framework and Binary Distillation Synthesis", Computers and Chemical Engineering, Vol. 18, No. 10, pp.933-969(1994).
  68. Luyben M.L. and C.A. Floudas, "A Multiobjective Optimization Approach for Analyzing the Interaction of Design and Control, Part 2: Reactor-Separator-Recycle System", Computers and Chemical Engineering, Vol. 18, No. 10, pp. 971-994(1994).
  69. Liu W.B. and C.A. Floudas, "Convergence of the GOP Algorithm for a Large Class of Smooth Optimization Problems", Journal of Global Optimization, 6, 207 (1995).
  70. Papalexandri K.P., E.N. Pistikopoulos, and C.A. Floudas, "Mass Exchange Networks for Waste Minimization : A Simultaneous Approach", Chemical Engineering Research and Design, Vol. 72, pp. 279-294 (1994).
  71. Liu W.B. and C.A. Floudas, "A Generalized Primal-Relaxed Dual Approach for Global Optimization", Journal of Optimization Theory and its Applications, 90, pp. 417-434, (1996).
  72. McDonald C.M. and C.A. Floudas (PostScript (1847K), PDF (610K)), "Global Optimization for the Phase and Chemical Equilibrium Problem : Application to the NRTL Equation", Computers and Chemical Engineering, 19, 11, pp. 1111-1141(1995).
  73. Papalexandri K.P., E.N. Pistikopoulos, and C.A. Floudas, "Synthesis of Mass Exchanger Networks for Waste Minimization : An MINLP Approach", Proceedings of ESCAPE-4, pp. 351-358(1994).
  74. Rojnuckarin A., C.A. Floudas, H. Rabitz, and R.A. Yetter, "Optimal Control of a Plug Flow Reactor with a Complex Reaction Mechanism", Journal of Physical Chemistry, Vol. 97, No. 45, pp. 11689-11695, (1993).
  75. Barmish B.R., C.A. Floudas, C.V. Hollot, and R. Tempo, "A Global Linear Programming Solution to Some Open Robustness Problems Including Matrix Polytope Stability", Proceedings of the ACC'95 conference.
  76. McDonald C.M. and C.A. Floudas, "Global Optimization for the phase equilibrium problem using the NRTL equation", Proceedings of ESCAPE-4, pp.273-280(1994).
  77. Luyben M.L. and C.A. Floudas, "Interaction between Design and Control in a Reactor Separator Recycle system", Proceedings of Process Systems Engineering, PSE'94, pp. 893-898(1994).
  78. McDonald C.M. and C.A. Floudas (PostScript (931K), PDF (488K)), "Decomposition Based and Branch and Bound Global Optimization Approaches for the Phase Equilibrium Problem", J. of Global Optimization, 5, 205-251 (1994).
  79. Luyben M.L. and C.A. Floudas, "Interaction between Design and Control in Heat-Integrated Distillation Synthesis", Proceedings of IFAC, IPDC'94, pp. 76-82 (1994).
  80. Psarris P. and C.A. Floudas, "Robust Stability Analysis of Systems with Real Parametric Uncertainty : A Global Optimization Approach", International J. of Robust and Nonlinear Control, 6, pp. 699-717, (1995).
  81. Maranas C.D., I.P. Androulakis, C.A. Floudas, A.J. Berger, and J.M. Mulvey, "Solving Stochastic Control Problems in Finance via Global Optimization", Journal of Economics, Dynamics and Control, 21, pp. 1405-1425, (1997).
  82. McDonald C.M. and C.A. Floudas (PostScript (473K), PDF (351K)), "Global Optimization for the Phase Stability Problem", AIChE J., 41,7, 1798-1814(1995).
  83. Floudas C.A. and I.E. Grossmann, "Algorithmic Approaches to Process Synthesis: Logic and Global Optimization", Proceedings of FOCAPD'94, (Eds. Doherty and Biegler), pp. 198-221(1995).
  84. Maranas C.D. and C.A. Floudas (PostScript (392K), PDF (368K)), "Global Optimization in Generalized Geometric Programming", Computers and Chemical Engineering, 21, 351-370, (1997).
  85. McDonald C.M. and C.A. Floudas (PostScript (306K), PDF (274K)), "Global Optimization and Analysis for the Gibbs Free Energy Function for the UNIFAC, Wilson, and ASOG Equations", Industrial and Engineering Chemistry Research, 34, pp. 1674-1687(1995).
  86. Androulakis I.P., C.D. Maranas, and C.A. Floudas (PostScript (184K), PDF (154K)), "aBB : A Global Optimization Method for General Constrained Nonconvex Problems", Journal of Global Optimization, 7, 4, pp. 337-363(1995).
  87. Maranas C.D. and C.A. Floudas (PostScript (308K), PDF (227K)), "Finding All Solutions of Nonlinearly Constrained Systems of Equations", Journal of Global Optimization, 7, 2, pp. 143-182(1995).
  88. Androulakis I.P., V. Visweswaran and C.A. Floudas (PostScript (136K), PDF (158K)), "Distributed Decomposition based Approaches in Global Optimization", State of the Art in Global Optimization : Computational Methods and Applications, (Eds. C.A. Floudas and P.M. Pardalos), Kluwer Academic Publishers, Book Series on Nonconvex Optimization and Its Applications, (1996).
  89. Visweswaran V., C.A. Floudas, M.G. Ierapetritou, and E.N. Pistikopoulos (PostScript (89K), PDF (216K)), "A Decomposition based Global Optimization Approach for Solving Bilevel Linear and Nonlinear Quadratic Programs", State of the Art in Global Optimization : Computational Methods and Applications, (Eds. C.A. Floudas and P.M. Pardalos), Kluwer Academic Publishers, Book Series on Nonconvex Optimization and Its Applications, (1996).
  90. Maranas C.D., I.P. Androulakis and C.A. Floudas (PostScript (213K), PDF (295K)), "A Deterministic Global Optimization Approach for the Protein Folding Problem", DIMACS Series in Discrete Mathematics and Theoretical Computer Science, pp. 133-150, (1995).
  91. Rojnuckarin A., C.A. Floudas, H. Rabitz, and R.A. Yetter, "Methane Conversion to Ethylene and Acetylene : Optimal Control with Chlorine, Oxygen and Heat Flux", IE&C Fundamentals, 35, pp. 683-696, (1996).
  92. Hatzimanikatis V., C.A. Floudas and J.E. Bailey, "Analysis and Design of Metabolic Reaction Networks via Mixed-Integer Linear Optimization", AIChE J., 42, pp. 1277-1292, (1996).
  93. Maranas, C.D., C.M. McDonald, S.T. Harding, and C.A. Floudas (PostScript (123K), PDF (136K)), "Locating All Azeotropes in Homogeneous Azeotropic Systems", Computers and Chemical Engineering, 20, pp. S413-418, (1996).
  94. Adjiman, C.S., I.P. Androulakis, C.D. Maranas, and C.A. Floudas (PostScript (424K), PDF (161K)), "A Global Optimization Method aBB for Process Design", Computers and Chemical Engineering, 20, pp. S419-424, (1996).
  95. Hatzimanikatis V., C.A. Floudas and J.E. Bailey, "Optimization of Regulatory Architectures in Metabolic Reaction Networks", Biotechnology and Bioengineering, 52, pp. 485-500, (1996).
  96. Floudas C.A. and S. Zlobec, "Optimality and Duality in Parametric Convex Lexicographic Programming", Multilevel Optimization: Algorithms and Applications, (Eds. A. Migdalas, P.M. Pardalos, and P. Varbrand), Kluwer Academic Publishers, pp. 259-379, (1996).
  97. McDonald C.M. and C.A. Floudas (PostScript (380K), PDF (376K)), "GLOPEQ: A New Computational Tool for the Phase and Chemical Equilibrium Problem", Computers and Chemical Engineering, 21, pp. 1-23, (1997).
  98. Adjiman C.S. and C.A. Floudas (PostScript (418K), PDF (250K)), "Rigorous Convex Underestimators for General Twice-Differentiable Problems", Journal of Global Optimization, 9, pp. 23-40, (1996).
  99. Ierapetritou M.G., E.N. Pistikopoulos and C.A. Floudas, "Operational Planning Under Uncertainty", Computers and Chemical Engineering, 20, pp. 1499-1516, (1996).
  100. Androulakis I.P., C.D. Maranas and C.A. Floudas, "Prediction of Oligopeptide Conformations via Deterministic Global Optimization", Journal of Global Optimization, 11, pp. 1-34, June (1997).
  101. Vassiliadis V.S. and C.A. Floudas, "The Modified Barrier Function Approach for Large-Scale Optimization", Computers and Chemical Engineering, 21, 855-874, (1997).
  102. Harding S.T., C.D. Maranas, C.M. McDonald, and C.A. Floudas (PostScript (389K), PDF (319K)), "Locating All Homogeneous Azeotropes in Multicomponent Mixtures", Industrial and Engineering Chemistry Research, 36, pp. 160-178, (1997).
  103. Harding S.T. and C.A. Floudas (PostScript (481K), PDF (449K)), "Global Optimization in Multiproduct and Multipurpose Batch Design Under Uncertainty", Industrial and Engineering Chemistry Research, 36, pp. 1644-1664, (1997).
  104. Androulakis I.P., N.N. Nayak, D.S. Monos, M.G. Ierapetritou, and C.A. Floudas (PostScript (11650K), PDF (5880K)), "A Predictive Method for Evaluation of Peptide Binding in Pocket-1 of HLA-DRB1 via Global Minimization of Energy Interactions", Proteins: Structure, Function, and Genetics, 29, 1, pp. 87-102, (1997).
  105. Adjiman C.S., I.P. Androulakis, and C.A. Floudas (PostScript (192K), PDF (104K)), "Global Optimization of MINLP Problems in Process Synthesis and Design", Computers and Chemical Engineering, Computers and Chemical Engineering, 21, pp. S445-S450, (1997).
  106. Klepeis J.L., I. P. Androulakis, M. G. Ierapetritou, and C. A. Floudas (PostScript (6740K), PDF (3335K)), "Predicting Solvated Peptide Conformations via Global Minimization of Energetic Atom--to--Atom Interactions", Computers and Chemical Engineering, 22, pp. 765-788 (1998).
  107. Adjiman C.S., S. Dallwig, C.A. Floudas, and A. Neumaier (PostScript (868K), PDF (437K)), "A Global Optimization Method, aBB, for General Twice-Differentiable Constrained NLPs - I. Theoretical Advances", Computers and Chemical Engineering, 22, pp. 1137-1158 (1998).
  108. Adjiman C.S., I.P. Androulakis, and C.A. Floudas (PostScript (752K), PDF (383K)), "A Global Optimization Method, aBB, for General Twice-Differentiable Constrained NLPs - II. Implementation and Computational Results", Computers and Chemical Engineering, 22, pp. 1159-1179 (1998).
  109. Androulakis I.P. and C.A. Floudas (PostScript (542K), PDF (278K)), "Distributed Branch and Bound Algorithms for Global Optimization", IMA Volumes in Mathematics and its Applications, Parallel Processing of Discrete Problems, (Ed. P.M. Pardalos), Springer-Verlag, Vol. 106, pp. 1-36, (1998).
  110. Schweiger C.A. and C.A. Floudas (PostScript (873K), PDF (412K)), "Interaction of Design and Control: Optimization with Dynamic Models", Optimal Control: Theory, Algorithms, and Applications, (W.W. Hager and P.M. Paradolos, Editors), Kluwer Academic Publishers, pp. 388-435, (1997).
  111. Adjiman C.S. C.A. Schweiger and C.A. Floudas (PostScript (561K), PDF (291K)), "Nonlinear and Mixed-Integer Optimization in Chemical Process Network Systems", DIMACS Series in Discrete Mathematics and Theoretical Computer Science, 40, pp. 429-452, (1998).
  112. Adjiman C.S. C.A. Schweiger and C.A. Floudas (PostScript (957K), PDF (586K)), "Mixed-Integer Nonlinear Optimization in Process Synthesis", Handbook of Combinatorial Optimization, (Eds. D.-Z. Du and P.M. Pardalos), vol. 1 (1999).
  113. Klepeis J.L., M.G. Ierapetritou and C.A. Floudas (PostScript (3469K), PDF (1677K)), "Protein Folding and Peptide Docking: A Molecular Modeling and Global Optimization Approach", Computers and Chemical Engineering, 22, pp. S3-S10 (1998).
  114. Esposito W.R. and C.A. Floudas (PostScript (225K), PDF (125K)), "Parameter Estimation in Nonlinear Algebraic Models via Global Optimization", Computers and Chemical Engineering, 22, pp. S213-S220, (1998).
  115. Ierapetritou M.G. and C.A. Floudas, "Short-term Scheduling: New Mathematical Models vs. Algorithmic Improvements", Computers and Chemical Engineering, 22, pp. S419-S426 (1998).
  116. Esposito W.R. and C.A. Floudas (PostScript (930K), PDF (463K)), "Global Optimization in Parameter Estimation of Nonlinear Algebraic Models via the Error-In-Variables Approach", Industrial and Engineering Chemistry Research, 37, pp.1841-1858, (1998).
  117. Floudas C.A., J.L. Klepeis and P.M. Pardalos (PostScript (508K), PDF (309K)), "Global Optimization Approaches in Protein Folding and Peptide Docking", DIMACS Series in Discrete Mathematics and Theoretical Computer Science, (Ed. F. Roberts), 47, 141-171 (1999).
  118. Adjiman C.S., I.P. Androulakis and C.A. Floudas (PostScript (1139K), PDF (576K)), "Global Optimization of Mixed Integer Nonlinear Problems", AIChE Journal, 46, 1769-1797 (2000).
  119. Floudas C.A. (PostScript (100K), PDF (178K)), "Global Optimization In Design and Control of Chemical Process Systems", Proceedings of DYCOPS-5 on Dynamics and Control of Process Systems, pp. 167-178 (1998).
  120. Schweiger C.A. and C.A. Floudas (PostScript (351K), PDF (159K)), "Process Synthesis, Design and Control: A Mixed Integer Optimal Control Framework", Proceedings of DYCOPS-5 on Dynamics and Control of Process Systems, pp. 189-194 (1998).
  121. Ierapetritou M.G. and C.A. Floudas (PostScript (862K), PDF (278K)), "Effective Continuous-Time Formulation for Short-Term Scheduling. 1. Multipurpose Batch Processes", Industrial and Engineering Chemistry Research, 37, pp.4341-4359, (1998).
  122. Ierapetritou M.G. and C.A. Floudas (PostScript (960K), PDF (272K)), "Effective Continuous-Time Formulation for Short-Term Scheduling. 2. Continuous and Semicontinuous Processes", Industrial and Engineering Chemistry Research, 37, pp.4360-4374, (1998).
  123. Schweiger C.A. and C.A. Floudas (PostScript (1187K), PDF (569K)), "Optimization Framework for the Synthesis of Chemical Reactor Networks", Industrial and Engineering Chemistry Research, 38, pp.744-766, (1999).
  124. Klepeis J.L. and C.A. Floudas (PostScript (13438K), PDF (13428K)), "A Comparative Study of Global Minimum Energy Conformations of Hydrated Peptides", Journal of Computational Chemistry, 20, pp.636-654, (1999).
  125. Westerberg K.M. and C.A. Floudas (PostScript (2822K), PDF (10663K)), "Locating All Transition States and Studying Reaction Pathways of Potential Energy Surfaces", Journal of Chemical Physics, 110, pp.9259-9296, (1999).
  126. Klepeis J.L. and C.A. Floudas (PostScript (1516K), PDF (5357K)), "Free Energy Calculations for Peptides via Deterministic Global Optimization", Journal of Chemical Physics, 110, pp.7491-7512, (1999).
  127. Ierapetritou M.G., C.A. Floudas, S. Vasantharajan, and A.S. Cullick (PostScript (2731K), PDF (16986K)), "Optimal Location of Vertical Wells: A Decomposition Approach", AIChE Journal, 45, pp.844-859, (1998).
  128. Ierapetritou M.G., T.S. Hene, and C.A. Floudas (PostScript (701K), PDF (133K)), "Effective Continuous-Time Formulation for Short Term Scheduling. 3. Multiple Intermediate Due Dates", Industrial and Engineering Chemistry Research, 38, 9, 3446-3461 (1999).
  129. Klepeis J.L., C.A. Floudas, D. Morikis, and J.D. Lambris (PostScript (1571K), PDF (7,254K)), "Predicting Peptide Structures Using NMR Data and Deterministic Global Optimization", Journal of Computational Chemistry, 20, 13, 1354-1370 (1999).
  130. Schweiger C.A. and C.A. Floudas, (PostScript (306K), PDF (133K)), "Synthesis of Optimal Chemical Reactor Networks", Computers and Chemical Engineering, S47-50 (1999).
  131. Ierapetritou M.G., T.S. Hene and C.A. Floudas (PostScript (109K), PDF (56K)), "Short-Term Scheduling of Batch Plants with Multiple Intermediate Due Dates", Computers and Chemical Engineering, 23, S515-518 (1999).
  132. Floudas C.A. (PostScript (473K), PDF (198K)), "Recent Advances in Global Optimization for Process Synthesis, Design and Control: Enclosure of All Solutions", Computers and Chemical Engineering, S963-973 (1999).
  133. Harding S.T. and C.A. Floudas (PostScript (780K), PDF (353K)), "Phase Stability with Cubic Equations of State: A Global Optimization Approach", AIChE Journal, 46,7, 1422-1440 (2000).
  134. Harding S.T. and C.A. Floudas, (PostScript (741K), PDF (347K)), "Locating Heterogeneous and Reactive Azeotropes", Industrial and Engineering Chemistry Research, 39, 6, 1576-1595 (2000).
  135. Esposito W.R. and C.A. Floudas, (PostScript (497K), PDF (453K)), "Global Optimization for the Parameter Estimation of Differential-Algebraic Systems", Industrial and Engineering Chemistry Research, 39, 5, 1291-1310 (2000).
  136. Esposito W.R. and C.A. Floudas, (PostScript (398K), PDF (353K)), "Deterministic Global Optimization in Nonlinear Optimal Control Problems", Journal of Global Optimization, 17, 97-126 (2000).
  137. Hertz D., C.S. Adjiman and C.A. Floudas, (PostScript (183K), PDF (187K)), "Two results on bounding the roots of interval polynomials", Computers and Chemical Engineering, 23, 1333-1339 (1999).
  138. Floudas C.A. and P.M. Pardalos, "Recent Developments in Global Optimization and Their Relevance to Process Design", In Proceedings of the Foundations of Computer Aided Process Design, FOCAPD'99, Malone M.F. and J.A. Trainham, Eds., (1999).
  139. Ierapetritou M.G., I.P. Androulakis, D.S. Monos, and C.A. Floudas, "Structure Prediction of Binding Sites of MHC Class II Molecules based on the Crystal of HLA-DRB1 and Global Optimization", in Optimization in Computational Chemistry and Molecular Biology, Floudas C.A. and P.M. Pardalos, (Eds.), Kluwer Academic Publishers, 157-190 (2000).
  140. Westerberg K.M. and C.A. Floudas, "Dynamics of Peptide Folding : Transition States and Reaction Pathways of Solvated and Unsolvated Tetra-Alanine", Journal of Global Optimization, 15, 261-297 (1999).
  141. Klepeis J.L. and C.A. Floudas, (PostScript (7272K), PDF (5769K)), "Methodology for Elucidating the Folding Dynamics of Peptides : Met-Enkephalin Case Study", in Optimization in Computational Chemistry and Molecular Biology, Floudas C.A. and P.M. Pardalos, (Eds.), Kluwer Academic Publishers, 19-46 (2000).
  142. Klepeis J.L. and C.A. Floudas, (PostScript (611K), PDF (1209K)), "Deterministic Global Optimization and Torsion Angle Dynamics for Molecular Structure Prediction", Computers and Chemical Engineering, 24,1761-1766 (2000).
  143. Esposito W.R. and C.A. Floudas, (PostScript (93K), PDF (70K)), "Global Optimization of Nonconvex Problems with Differential-Algebraic Constraints", in European Symposium on Computer Aided Process Engineering - 10, S. Pierucci, (Ed.), Elsevier, 73-78 (2000).
  144. Lin X. and C.A. Floudas, (PostScript (121K), PDF (54K)), "Design, Synthesis and Scheduling of Multipurpose Batch Plants via an Effective Continuous-time Formulation", in European Symposium on Computer Aided Process Engineering - 10, S. Pierucci, (Ed.), Elsevier, 1159-1164 (2000).
  145. Floudas C.A., "Global Optimization In Design and Control of Chemical Process Systems", Journal of Process Control, 10, 2-3, 125-134 (2000).
  146. Floudas C.A., "Mixed-Integer Nonlinear Optimization", Chapter in Handbook of Applied Optimization, Oxford University Press, M. Resende and P.M. Pardalos, (Eds.), 451 (2001).
  147. Floudas C.A., "Deterministic Global Optimization and Its Applications", Chapter in Handbook of Applied Optimization, Oxford University Press, M. Resende and P.M. Pardalos, (Eds.), 311 (2001).
  148. Gumus Z.H. and C.A. Floudas, ( PostScript(560K)), "Global Optimization of Nonlinear Bilevel Programming Problems", Journal of Global Optimization, 20, 1-31 (2001).
  149. Klepeis J.L., H.D. Schafroth, K.M. Westerberg, and C.A. Floudas, (PostScript (19221K)), "Deterministic Global Optimization and Ab Initio Approaches for the Structure Prediction of Polypeptides, Dynamics of Protein Folding and Protein-Protein Interactions", Advances in Chemical Physics, 120, 265-457 (2002).
  150. Floudas C.A., Z.H. Gumus, and M.G. Ierapetritou, ( PostScript(715K)), "Global Optimization in Design Under Uncertainty: Feasibility Test and Flexibility Index Problems", Industrial and Engineering Chemistry Research, 40, 4267-4282 (2001).
  151. Lin X. and C.A. Floudas, (PostScript (242K), PDF (135K)), "Design, Synthesis and Scheduling of Multipurpose Batch Plants via an Effective Continuous-Time Formulation", Computers and Chemical Engineering, 25, 665-674 (2001).
  152. Esposito W.R. and C.A. Floudas, "Deterministic Global Optimization in Isothermal Reactor Network Synthesis", Journal of Global Optimization, 22, 59-95 (2002).
  153. Klepeis J.L. and C.A. Floudas, (PostScript (1586K), PDF (7341K)), "Deterministic Global Optimization for Protein Structure Prediction", Chapter in Advances in Convex Analysis and Global Optimization, a Book in honor of C. Caratheodory, N. Hadjisavvas and P.M. Pardalos (Eds.), 31-74 (2001).
  154. Esposito W.R. and C.A. Floudas, (PostScript (85K), PDF (150K)), "Rebuttal to Comments on Global Optimization for the Parameter Estimation of Differential Algebraic Systems", Industrial and Engineering Chemistry Research, 40, 490-491 (2001).
  155. Klepeis J.L. and C.A. Floudas, (PostScript (823K), PDF (372K)), "Ab Initio Prediction of Helical Segments in Polypeptides", Journal of Computational Chemistry, 23, 245-266 (2002). (News)
  156. Faliks A., R.A. Yetter, C.A. Floudas, R. Hall, and H. Rabitz, "Optimal Control of Methane Conversion to Ethylene", Journal of Physical Chemistry A, 104, 10740-10746 (2000).
  157. Faliks A., R.A. Yetter, C.A. Floudas, Y. Wei, and H. Rabitz, "Optimization of Living Polymerization Through Distributed Control of a Nitroxide Radical", POLYMER, 42, 2061-2065 (2001).
  158. Faliks A., R.A. Yetter, C.A. Floudas, S.L. Bernasek, and M. Fransson and H. Rabitz, "Optimal Control of Catalytic Methanol Conversion to Formaldehyde", Journal of Physical Chemistry A, 105, 2099-2105 (2001).
  159. Gumus Z.H. and C.A. Floudas, "Nonlinear Bilevel Programming: A Deterministic Global Optimization Framework", in European Symposium on Computer Aided Process Engineering - 11, Elsevier (2001).
  160. Ierapetritou M.G. and C.A. Floudas, "Comments on An Improved RTN Continuous-Time Formulation for the Short-Term Scheduling of Multipurpose Batch Plants", Industrial and Engineering Chemistry Research, 40, 5040-5041 (2001).
  161. Lin X. and C.A. Floudas, "A Novel Continuous-Time Modeling and Optimization Framework for Well Platform Planning Problems", Optimization and Engineering, 4, 65-95 (2003).
  162. Faliks A., R.A. Yetter, C.A. Floudas, Y. Wei, and H. Rabitz, "Optimization of Living Radical Polymerization Through Distributed Control of Energy", Macromolecular Chemistry and Physics, 202(13), 2797-2801 (2001).
  163. Klepeis J.L. and C.A. Floudas, "Prediction of Beta-Sheet Topology and Disulfide Bridges in Polypeptides", Journal of Computational Chemistry, 24, 191-208 (2003). (News)
  164. Adjiman C.S. and C.A. Floudas, "Deterministic Global Optimization of Processes: From Theory to Practice", Proceedings of Conference, France (2001).
  165. Lin X., C.A. Floudas, S. Modi, and N.M. Juhasz, (PostScript (12950K), PDF (6234K))), "Continuous-Time Optimization Approach for Medium-Range Production Scheduling of a Multiproduct Batch Plant", Industrial and Engineering Chemistry Research, 41, 3884-3906 (2002). (News)
  166. Klepeis J.L. and C.A. Floudas, "ASTRO-FOLD: Ab Initio Secondary and Tertiary Structure Prediction in Protein Folding", in European Symposium on Computer Aided Process Engineering - 12, Elsevier (2002).
  167. Klepeis J.L. and C.A. Floudas, "Ab Initio Tertiary Structure Prediction of Proteins", Journal of Global Optimization, 25, 113-140 (2003). (News)
  168. Meyer C.A., C.A. Floudas, and A. Neumaier, "Global Optimization with Non-Factorable Constraints", Industrial and Engineering Chemistry Research, 41, 6413-6424 (2002).
  169. Meyer C.A. and C.A. Floudas, "Convex Hull of Trilinear Monomials with Positive or Negative Domains: Facets of the Convex and Concave Envelopes", in Frontiers in Global Optimization, C.A. Floudas and P.M. Pardalos (Eds.), Kluwer Academic Publishers, 327-352 (2003).
  170. Westerberg K.M. and C.A. Floudas, "Understanding Beta-Sheet Folding Through Reaction Pathways on Energy Landscapes: I. Search for Stationary Points", submitted for publication (2002).
  171. Westerberg K.M. and C.A. Floudas, "Understanding Beta-Sheet Folding Through Reaction Pathways on Energy Landscapes: II. Analysis of Dynamics", submitted for publication (2002).
  172. Lin X., E.D. Chajakis and C.A. Floudas, "Scheduling of Tanker Lightering via a Novel Continuous-Time Optimization Framework", Industrial and Engineering Chemistry Research, 42, 4441-4451 (2003).
  173. Klepeis J.L., M. Pieja, and C.A. Floudas, "A New Class of Hybrid Global Optimization Algorithms for Peptide Structure Prediction: Integrated Hybrids", Computer Physics Communications, 151, 121-140 (2003). (News)
  174. Klepeis J.L., M. Pieja, and C.A. Floudas, "A New Class of Hybrid Global Optimization Algorithms for Peptide Structure Prediction: Alternating Hybrids and Application fo Met-Enkephalin and Melittin", Biophysical Journal, 84, 869-882 (2003). (News)
  175. Meyer C.A. and C.A. Floudas, "Convex Hull of Trilinear Monomials with Mixed Sign Domains", Journal of Global Optimization, 29 (2), 125-155 (2004).
  176. Faliks A., R.A. Yetter, C.A. Floudas, Y. Wei, and H. Rabitz, "Optimization of Polymer Synthesis Through Distributed Control of Polymerization Conditions", Journal of Applied Polymer Science, 85(14), 2922-2928 (2002).
  177. Floudas C.A. and X. Lin, "Continuous-Time versus Discrete-Time Approaches for Scheduling of Chemical Processes: A Review", Computers and Chemical Engineering, 28 (11), 2109-2129 (2004).
  178. Klepeis J.L., C.A. Floudas, D. Morikis, C.G. Tsokos, E. Argyropoulos, L. Spruce, and J.D. Lambris, "Integrated Computational and Experimenal Approach for Lead Optimization and Design of Compstatin Variants with Improved Activity", Journal of the American Chemical Society, 125 (28), 8422-8423 (2003). (News)
  179. Floudas C.A. and X. Lin, "Mixed Integer Linear Programming in Process Scheduling: Modeling, Algorithms, and Applications", Annals of Operations Research, 139, 131-162 (2005).
  180. Lin X. and E.D. Chajakis and C.A. Floudas, "Continuous-Time Scheduling of Tanker Lightering in Crude Oil Supply Chain" Proceedings of PSE-2003, 547-553 (2004).
  181. Floudas C.A., "Systems Approaches in Bioinformatics and Computational Genomics", Challenges for the Chemical Sciences in the 21th Century, Information and Communications Workshop, National Research Council of the National Academies, National Academies Press, 116-125 (2003).
  182. Akrotirianakis I.G. and C.A. Floudas, "A New Class of Improved Convex Underestimators for Twice Continuously Differentiable Constrained NLPs", Journal of Global Optimization, 30 (4), 367-390 (2004).
  183. Caratzoulas S. and C.A. Floudas, "Trigonometric Convex Underestimator for the Base Functions in Fourier Space", Journal of Optimization Theory and Applications, 124 (2), 339-362 (2004).
  184. Lin X., S.L. Janak, and C.A. Floudas, "A New Robust Optimization Approach for Scheduling under Uncertainty: I. Bounded Uncertainty", Computers and Chemical Engineering, 28, 1069-1085 (2004).
  185. Klepeis J.L. and C.A. Floudas, "ASTRO-FOLD: a combinatorial and global optimization framework for ab initio prediction of three-dimensional structures of proteins from the amino acid sequence", Biophysical Journal, 85, 2119-2146 (2003). (News)
  186. Loose C., J.L. Klepeis, and C.A. Floudas, "A New Pairwise Folding Potential Based on Improved Decoy Generation and Side-Chain Packing", Proteins, 54, 303-314 (2004). (News)
  187. Lin X. and C.A. Floudas and J. Kallrath, "Global Solution Approach for a Nonconvex MINLP Problem in Product Portfolio Optimization", Journal of Global Optimization, 32, 417-431 (2005).
  188. Schweiger C.A. and C.A. Floudas, "The MINOPT Modeling Language", Invited Chapter in Modeling Languages, Ed. J. Kallrath, Kluwer Academic Publishers (2003).
  189. Klepeis J.L., C.A. Floudas, D. Morikis, and J.D. Lambris, "Design of Peptide Analogs with Improved Activity using a Novel de novo Protein Design Approach", Industrial and Engineering Chemistry Research, 43, 3817-3826 (2004). (News)
  190. Lin X., C.A. Floudas, Y. Wang, and J.R. Broach, "Theoretical and Computational Studies of the Glucose Signaling Pathways in Yeast Using Global Gene Expression Data", Biotechnology and Bioengineering, 84, 864-886 (2003).
  191. Schafroth H.D. and C.A. Floudas, "Predicting peptide binding to MHC pockets via molecular modeling, implicit solvation, and global optimization", Proteins, 54, 534-556 (2004).
  192. Akrotirianakis I.G. and C.A. Floudas, "Computational Experience with a New Class of Convex Underestimators: Box Constrained NLP Problems", Journal of Global Optimization, 29 (3), 249-264 (2004).
  193. Morikis D., A.M. Soulika, B. Mallik, J.L. Klepeis, C.A. Floudas, and J.D. Lambris, "Improvement of the anti-C3 activity of complement using rational and combinatorial approaches", Biochemical Society Transactions, 32, 28-32 (2003).
  194. Loose C., J.L. Klepeis and C.A. Floudas, "Novel Backbone and Side-Chain Distance-Dependent Potentials for Pairwise Residue Interactions", submitted for publication (2004).
  195. Schafroth H.D., D. Monos, A. Constantinescou, and C.A. Floudas, "Predicting Peptide Binding to HLA Class II Molecules via Atomistic Level Modeling, Solvation Methods, and Deterministic Global Optimization", Tissue Antigens, 59, 25 (2002).
  196. Floudas C.A. and H.Th. Jongen, "Global Optimization: Local Minima and Transition Points", Journal of Global Optimization, 32, 409-415 (2005).
  197. Gumus Z.H. and C.A. Floudas, "Global Optimization of Mixed-Integer Bilevel Programming Problems", Computational Management Science, 2, 181-212 (2005).
  198. Schafroth H.D. and C.A. Floudas, "Design of Peptide Binders for MHC and TCR Molecules via Mixed-Integer Optimization: An Innovative In Silico Approach", submitted for publication (2004).
  199. Klepeis J.L., Y. Wei, M.H. Hecht, and C.A. Floudas, "Ab Initio Prediction of the 3-Dimensional Structure of a De Novo Designed Protein: A Double Blind Case Study", Proteins, 58, 560-570 (2005).
  200. McAllister S.R., Mickus B.E., J.L. Klepeis, and C.A. Floudas, "A Novel Approach for Alpha-Helical Topology Prediction in Globular Proteins: Generation of Interhelical Restraints", Proteins, 65, 930-952 (2006).
  201. Meyer C.A., and C.A. Floudas, "Convex underestimation of twice continuously differentiable functions by piecewise quadratic perturbation: Spline aBB underestimators", Journal of Global Optimization, 32 (2), 221-258 (2005).
  202. Klepeis J.L. and C.A. Floudas, "In silico design of peptides and proteins: A combinatorial and global optimization approach", SIAM news (2004). (News)
  203. Floudas C.A. and J.L. Klepeis and J.D. Lambris and D. Morikis, "De novo protein design: An interplay of global optimization, mixed-integer optimization, and experiments", Proceedings of FOCAPD'2004, eds. C.A. Floudas and A. Agrawal, pp. 133-146 (2004).
  204. Klepeis J.L. and C.A. Floudas, "Analysis and Prediction of Loop Segments in Protein Structures", Computers and Chemical Engineering, 29, 423-436 (2005).
  205. Janak S.L., X. Lin, and C.A. Floudas, "Enhanced Continuous-Time Unit-Specific Event Based Formulation for Short-Term Scheduling of Multipurpose Batch Processes: Resource Constraints and Mixed Storage Policies", Industrial and Engineering Chemistry Research, 43, 2516-2533 (2004).
  206. Floudas C.A., I.G. Akrotirianakis, S. Caratzoulas, C.A. Meyer, and J. Kallrath, "Global Optimization in the 21st Century", European Symposium on Computer-Aided Process Engineering - 14, A. Barbosa-Povoa and H. Matos (Eds.), Elsevier B.V., pp. 23-51 (2004).
  207. Meyer C.A. and C.A. Floudas, "Convex Envelopes for Edge-Concave Functions", Mathematical Programming, 103 (2), 207-224 (2005).
  208. Floudas C.A., I.G. Akrotirianakis, S. Caratzoulas, C.A. Meyer, and J. Kallrath, "Global Optimization in the 21st Century: Advances and Challenges", Computers and Chemical Engineering, 29 (6), 1185-1202 (2005).
  209. Floudas C.A., H.K. Fung, S.R. McAllister, M. Monnigmann, and R. Rajgaria, "Advances in Protein Structure Prediction and De Novo Protein Design: A Review", Chemical Engineering Science, 61, 966-988 (2006).
  210. Floudas C.A. and S.L. Janak, "Comments on New General Continuous-Time State Task Network Formulation for Short-Term Scheduling of Multipurpose Batch Plants and on Enhanced Continuous Time Unit Specific Event Based Formulation for Short Term Scheduling of Multipurpose Batch Processes", Industrial and Engineering Chemistry Research, 44, 1985-1986, (2005).
  211. Floudas C.A. and H.K. Fung (PDF (156K)), "Mathematical Modeling and Optimization Methods for De Novo Protein Design", in Systems Biology, I. Rigoutsos and G. Stephanopoulos (Eds), Oxford University Press, 42-66, (2007).
  212. Meyer C. and C.A. Floudas, "Global Optimization of a Combinatorially Complex Generalized Pooling Problem", AIChE Journal, 52, 1027-1037 (2006).
  213. Fung H.K., Rao S., Floudas C.A., Prokopyev O., Pardalos P.M., and F. Rendl (PDF (172K)), "Computational Comparison Studies of Quadratic Assignment Like Formulations for the In Silico Sequence Selection Problem in De Novo Protein Design", Journal of Combinatorial Optimization, 10, 41-60 (2005).
  214. Monnigmann M. and C.A. Floudas, "Protein Loop Structure Prediction with Flexible Stem Geometries", Proteins, 61, 748-762 (2005).
  215. Floudas C.A., "Research Challenges, Opportunities and Synergism in Systems Engineering and Computational Biology", AIChE Journal, 51, 1872-1884 (2005).
  216. Janak S.L., Lin X. and C.A. Floudas, "A New Robust Optimization Approach for Scheduling under Uncertainty: II. Uncertainty with Known Probability Distribution", Computers and Chemical Engineering, 31, 171-195 (2007).
  217. Janak S.L., Taylor M., Floudas C.A., Burka M., and T.J. Mountziaris, "A Novel and Effective Integer Optimization Approach for the NSF Panel Assignment Problem: A Mutli-Resource and Preference-Constrained Generalized Assignment Problem", Industrial and Engineering Chemistry Research, 45, 258-265 (2006).
  218. Morikis D., Floudas C.A. and J.D. Lambris, "Structure-based integrative computational and experimental approach for the optimization of drug design", Lecture Notes in Computer Science, 3515, 680-688 (2005).
  219. McAllister S.R. and C.A. Floudas, "Structure Prediction of Alpha-Helical Proteins", Proceedings of the International Symposium on Mathematical and Computational Biology, BIOMAT 2005, Eds. R.P. Mondaini and R. Dilao, 265-288 (2006).
  220. McAllister S.R., Rajgaria R., and C.A. Floudas, "Global Pairwise Sequence Alignment Through Mixed-Integer Linear Programming: A Template-Free Approach", Optimization Methods and Software, 22 (1), 127-144 (2007).
  221. Fung H.K., Taylor M.S. and C.A. Floudas (PDF (239K)), "Novel Formulations for the Sequence Selection Problem in de Novo Protein Design with Flexible Templates", Optimization Methods and Software, 22 (1), 51-71 (2007).
  222. McAllister S.R., Rajgaria R., and C.A. Floudas, "A Template-based Mixed-Integer Linear Programming Sequence Alignment Model", Chapter in Models and Algorithms for Global Optimization, Eds. A. Torn and J. Zilinskas, Springer-Verlag, 4(6), 343-360 (2007).
  223. Janak S.L., Floudas C.A., Kallrath J. and N.Vormbrock, "Production Scheduling of a Large-Scale Industrial Batch Plant. I. Short-Term and Medium-Term Scheduling", Industrial Engineering Chemistry Research, 45, 8234-8252 (2006).
  224. Janak S.L., Floudas C.A., Kallrath J. and N.Vormbrock, "Production Scheduling of a Large-Scale Industrial Batch Plant. II. Reactive Scheduling", Industrial Engineering Chemistry Research, 45, 8253-8269 (2006).
  225. Floudas C.A. and V. Kreinovich, "Towards Optimal techniques for Solving Global Optimization Problems: Symmetry-based Approach", Chapter in Models and Algorithms for Global Optimization, Eds. A. Torn and J. Zilinskas, Springer-Verlag, 4(1), 21-42 (2007).
  226. Floudas C.A. and V. Kreinovich, "On the Functional Form of Convex Underestimators for Twice Continuously Differentiable Functions", Optimization Letters, 1, 1-6 (2006).
  227. Shaik M.A., Janak S.L. and C.A. Floudas (PDF (382K)), "Continuous-Time Models for Short-Term Scheduling of Multipurpose Batch Plants: A Comparative Study", Industrial Engineering Chemistry Research, 45(18), 6190-6209 (2006).
  228. Rajgaria R., McAllister S.R. and C.A. Floudas (PDF (353K)), "A Novel High Resolution Ca-Ca Distance Dependent Force Field Based on a High Quality Decoy Set", Proteins, 65(3), 726-741 (2006).
  229. Gounaris C.E., Floudas C.A. and J. Wei, "Rational Design of Shape Selective Separation and Catalysis: I. Concepts and Analysis", Chemical Engineering Science, 61(24), 7933-7948 (2006).
  230. Gounaris C.E., Wei J. and C.A. Floudas, "Rational Design of Shape Selective Separation and Catalysis: II. Mathematical Model and Computational Studies", Chemical Engineering Science, 61(24), 7949-7962 (2006).
  231. DiMaggio P.A. and C.A. Floudas, "De Novo Peptide Identification via Tandem Mass Spectrometry and Mixed-Integer Optimization", AIChE Journal, 53(1), 160-173 (2007).
  232. Shaik M.A. and C.A. Floudas, "An Improved Unit-Specific-Event based Continuous-Time Model for Short-Term Scheduling of Continuous Processes: Rigorous Treatment of Storage Requirements", Industrial Engineering Chemistry Research, 46, 1764-1779 (2007).
  233. Floudas C.A. and O. Stein, "The Adaptive Convexification Algorithm: A Feasible Point Method for Semi-Infinite Programming", SIOPT, 18(4), 1187-1208 (2007).
  234. Tan M.P., Broach J.R. and C.A. Floudas, "A Novel Clustering Approach and Prediction of Optimal Number of Clusters: I. Global Optimum Search with Enhanced Positioning", J. Global Optimization, 39, 323-346 (2007).
  235. Tan M.P., Broach J.R. and C.A. Floudas, "A Novel Clustering Approach and Prediction of Optimal Number of Clusters: II. Evaluation of Normalization and Pre-Clustering Issues", Journal of Bioinformatics and Computational Biology, 5(4), 895-913 (2007).
  236. McAllister S.R., Rajgaria R., and C.A. Floudas, "A Path Selection Approach to Global Pairwise Sequence Alignment using Integer Linear Optimization", Optimization, 57, 101-111 (2008).
  237. Floudas C.A, Fung H.K., Morikis D., Taylor M.S., and L. Zhang, "Overcoming the Key Challenges in De Novo Protein Design: Enhancing Computational Efficiency and Incorporating True Backbone Flexibility", Proceedings of BIOMAT VI, Ed. R. Mondaini, Springer, 102, 133-183 (2008).
  238. Janak S.L. and C.A. Floudas, "Improving Unit-Specific Event Based Continuous-Time Approaches for Batch Processes: Integrality Gap and Task Splitting", Computers and Chemical Engineering, 32, 913-955 (2008).
  239. DiMaggio P.A. and C.A. Floudas, "De Novo Peptide Identification via Tandem Mass Spectrometry and Integer Linear Optimization", Analytical Chemistry, 79, 1433-1466 (2007).
  240. Li H.-L., Tsai J.-F., and C.A. Floudas, "Convex Underestimation for Sums of Posynomial and Linear Functions of Positive Variables", Optimization Letters, 2, 333-340 (2008).
  241. Tan M.P. and C.A. Floudas, "A Novel Clustering Approach: Global Optimum Search with Enhanced Positioning", DIMACS, accepted for publication (2008).
  242. Shaik M.A. and C.A. Floudas, "Unit-Specific-Event based Continuous-Time Approach for Short-Term Scheduling of Batch Plants using RTN Framework", Computers and Chemical Engineering, 32, 260-274 (2008).
  243. Birgin E.G., Floudas C.A., and J.M Martinez, "Global Minimization using an Augmented Lagrangian Method with Variable Lower-Level Constraints", Mathematical Programming Ser. A, 125, 139-162 (2010).
  244. Rajgaria R., McAllister S.R. and C.A. Floudas, "Distance Dependent Centroid to Centroid Force Fields using High Resolution Decoys", Proteins, 70, 950-970 (2008).
  245. Gounaris C.E. and C.A. Floudas, "Tight Convex Underestimators for C2-Continuous Problems: I. Univariate Functions", J. Global Optimization, 42, 51-67 (2008).
  246. Gounaris C.E. and C.A. Floudas, "Tight Convex Underestimators for C2-Continuous Problems: II. Multivariate Functions", J. Global Optimization, 42, 69-89 (2008).
  247. C.A. Floudas, "Computational Methods in Protein Structure Prediction", Biotechnology and Bioengineering, 97, 207-213 (2007).
  248. Fung H.K., Welsh W.J., and C.A. Floudas, "Computational De Novo Peptide and Protein Design: Rigid Templates versus Flexible Templates", IECR, 47, 993-1001 (2008).
  249. Fung H.K., Floudas C.A, Taylor M.S., Zhang L., and D. Morikis, "Towards Full Sequence De Novo Protein Design with Flexible Templates for Human Beta-Defensin-2", Biophysical J., 94, 584-599 (2008).
  250. Shaik M.A., Floudas C.A., Kallrath J., and H.J. Pitz, "Production Scheduling of a Large-Scale Industrial Continuous Plant: Short-Term and Medium-Term Scheduling", Computers and Chemical Engineering, 33, 670-686 (2009).
  251. Gounaris C.E. and C.A. Floudas, "Convexity of Products of Univariate Functions and Convexification Transformations for Geometric Programming", J. Opt. Theory and App., 138(1), 407-427 (2008).
  252. DiMaggio P.A., McAllister S.R., Floudas C.A., Feng X.J., Rabinowitz J.D., and H.A. Rabitz, "Biclustering via Optimal Re-ordering of Data Matrices in Systems Biology: Rigorous Methods and Comparative Studies", BMC Bioinformatics, 9, 458 (2008) (highly accessed).
  253. McAllister S.R., DiMaggio P.A, Floudas C.A., Feng X.J., Rabinowitz J.D., and H.A. Rabitz, "Descriptor-Free Molecular Discovery in Large Libraries by Adaptive Substituent Reordering", Bioorganic and Medicinal Chemistry Letters, 18, 5967-5970 (2008).
  254. Yoon S.G., Park S.B., Park S., Lee J., Verderame P.M., and C.A. Floudas, "Synergy in Mergers of Petrochemical Companies within a Complex Considering Purchasing and Selling Advantage with Process Integration", Industrial and Engineering Chemistry Research, 47, 5556-5567 (2008).
  255. Taylor M.S., Fung H.K., Rajgaria R., Filizola M., Weinstein H., and C.A. Floudas, "Mutations Affecting the Oligomerization Interface of G-Protein Coupled Receptors Revealed by a Novel De Novo Protein Design Framework", Biophysical J., 94, 2470-2481 (2008).
  256. DiMaggio P.A., Floudas C.A., Lu B., and J.R. Yates, "A Hybrid Method for Peptide Identification using Integer Linear Optimization, Local Database Search, and QTOF or OrbiTrap Tandem Mass Spectrometry", J. Proteome Res., 7, 1584-1593 (2008).
  257. DiMaggio P.A., McAllister S.R., Floudas C.A., Feng X.J., Rabinowitz J.D., and H.A. Rabitz, "A network flow model for biclustering via optimal re-ordering of data matrices", J. of Global Optimization, 47, 343-354 (2010).
  258. DiMaggio P.A., McAllister S.R., Floudas C.A., Feng X.J., Rabinowitz J.D., and H.A. Rabitz, "Optimal Methods for Re-ordering Data Matrices in Systems Biology and Drug Discovery Applications", Biophysical Reviews and Letters, 3, 19-42 (2008).
  259. McAllister S.R. and C.A. Floudas, "Alpha Helical Topology and Tertiary Structure Prediction in Globular Proteins", Proceedings of 46th IEEE Conference on Decision and Control, 4551-4556 (2007).
  260. Tan M.P., Smith E.R., Broach J.R., and C.A. Floudas, "Microarray Data Mining: A Novel Optimization-Based Approach to Uncover Biologically Coherent Structures", BMC Bioinformatics, 9, 268-283 (2008) (highly accessed).
  261. McAllister S.R., DiMaggio P.A., and C.A. Floudas, "Mathematical Modeling and Efficient Optimization Methods for the Distance-Dependent Rearrangement Clustering Problem", J. of Global Optimization, 45, 111-129 (2009).
  262. McAllister S.R. and C.A. Floudas, "An Improved Hybrid Global Optimization Method for Protein Tertiary Structure Prediction", Computational Optimization and Applications, 45, 377-413 (2010).
  263. McAllister S.R. and C.A. Floudas, "Enhanced Bounding Techniques to Reduce the Protein Conformational Search Space", Optimization Methods and Software, 24 (4-5), 837-855 (2009).
  264. Verderame P.M. and C.A. Floudas, "Integrated Operational Planning and Medium-Term Scheduling of a Large-Scale Industrial Batch Plants", IECR, 47, 4845-4860 (2008).
  265. Verderame P.M. and C.A. Floudas, "Operational Planing Framework for Multisite Production and Distribution Networks", Computers & Chemical Engineering, 33, 1036-1050, (2009).
  266. Floudas C.A. and C.E. Gounaris. "A Review of Recent Advances In Global Optimization", J. of Global Optimization, 45, 3-38 (2009).
  267. McAllister S.R. and C.A. Floudas, "Alpha-Helical Topology Prediction and Generation of Distance Restraints in Membrane Proteins", Biophysical Journal, 95, 11, 5281-5295 (2008).
  268. Floudas C.A. and C.E. Gounaris, "An Overview of Advances in Global Optimization during 2003-2008", Invited Chapter, Fields Workshop on Global Optimization, Ed. P.M. Pardalos and T.F. Coleman, Fields Communications Series, Volume 55, 105-154 (2009).
  269. Rajgaria R., McAllister S.R., and C.A. Floudas, "Towards Accurate Residue-Residue Contact Prediction for Alpha Helical Proteins via Integer Linear Optimization", Proteins, 74, 929-947 (2009).
  270. Shaik M.A. and C.A. Floudas, "Novel Unified Modeling Approach for Short-term Scheduling", Industrial Engineering Chemistry Research, 48, 2947-2964 (2009).
  271. Bellows M.L., Fung H.K., Taylor M.S., Floudas C.A., Lopez de Victoria A., and D. Morikis, "New Compstatin Variants Through Two De Novo Protein Design Frameworks", Biophysical Journal, 98, 2337-2346 (2010).
  272. Lu H.-C., Li H.-L., Gounaris C.E., and C.A. Floudas, "Convex Relaxation for Solving Posynomial Programs", Journal of Global Optimization, 46, 147-154 (2010).
  273. Misener R., Gounaris C.E., and C.A. Floudas, "Global Optimization of Gas Lifting Operations: A Comparative Study of Piecewise Linear Formulations", Industrial Engineering Chemistry Research, 48, 6098-6104 (2009).
  274. DiMaggio P.A., McAllister S.R., Floudas C.A., Feng X.J., Rabinowitz J.D., and H.A. Rabitz, "Enhancing Molecular Discovery Using Descriptor-Free Rearrangement Clustering Techniques for Sparse Data Sets", AIChE J., 56(2), 405-418 (2010).
  275. Bellows M.L., Fung H.K., and C.A. Floudas., "Recent Advances In De Novo Protein Design", Chapter in Process Systems Engineering: Vol. 6 Molecular Systems Engineering, Eds. C.S. Adjiman and A. Galindo, Wiley-VCH, 207-232, (2010).
  276. Yoon S.G., Park S., Lee J., Floudas C.A., and P. Verderame, "Selecting the optimal target company based on synergy calculation for the vertical merger in a petrochemical complex", Industrial & Engineering Chemistry Research, 48, 151-1521, (2009).
  277. Gounaris C.E., Misener R., and C.A. Floudas, "Computational comparison of piecewise-linear relaxations for pooling problems", Industrial & Engineering Chemistry Research, 48, 5742-5766 (2009).
  278. Baliban R.C., DiMaggio P.A., Plazas-Mayorca M.D., Young N.L., Garcia B.A., and C.A. Floudas, "A novel approach for untargeted post-translational modification identification using integer linear optimization and tandem mass spectrometry", Molecular and Cellular Proteomics, 9.5, 764-779 (2010).
  279. Misener R., Gounaris C.E., and C.A. Floudas, "Advances in global optimization for standard, generalized, and extended pooling problems with the EPA complex emissions model constraints", Design for Energy and the Environment, FOCAPD-2009, M.M. Halwagi and A.A. Linninger (Eds.), pp. 1053-1071 (2009).
  280. Verderame P.M. and C.A. Floudas, "Operational planning of large scale industrial batch plants under demand due date and amount uncertainty: I. Robust optimization framework", Industrial Engineering Chemistry Research, 48, 7214-7231 (2009).
  281. Ranjan R., Thust S., Gounaris C.E., Woo M., Floudas C.A., Keitz M.V., Valentas K.J., Wei J., and M. Tsapatsis, " Adsorption of fermentation inhibitors from lignocellulosic biomass hydrolyzates for improved ethanol yield and value-added product recovery", Microporous Mesoporous Materials, 143-148 (2009).
  282. Young N.L., DiMaggio P.A., Plazas-Mayorca M.D., Baliban R.C., Floudas C.A., B.A. Garcia, "High-throughput characterization of combinatorial histone codes", Molecular and Cellular Proteomics, 8, 10, 2266-2284 (2009) (selected for Faculty of 1000 Biology). (News)
  283. Gounaris C.E., Wei J., and C.A. Floudas, "Rational design of shape selective separations and catalysis: Lattice relaxation, locally optimal conformations and effective aperture size", AIChE J., 56, 3, 611-632 (2010).
  284. Rajgaria R., Wei Y., and C.A. Floudas, "Contact prediction for beta and alpha-beta proteins using integer linear optimization and its impact on the first principles 3d structure prediction method ASTRO-FOLD", Proteins, 78, 1825-1846 (2010).
  285. Wei J., Floudas C.A., Gounaris C.E., and G.A. Somorjai, "Search engines for shape selectivity", Catalysis Letters, 133, 234-241 (2009).
  286. DiMaggio P.A., Young N.L., Baliban R.C., Garcia B.A., and C.A. Floudas, "A mixed integer linear optimization framework for the identification and quantification of targeted post-translational modifications of highly modified proteins using multiplexed electron transfer dissociation tandem mass spectrometry", Molecular & Cellular Proteomics, 8, 11, 2527-2543 (2009).
  287. Misener R. and C.A. Floudas, "Piece-wise linear approximations of multidimensional functions", Journal of Optimization Theory and its Applications, 145, 120-147 (2010).
  288. Misener R. and C.A. Floudas, "Advances for the pooling problem: Modeling, global optimization and computational studies", Appl. Comput. Math., 8, 3-22 (2009).
  289. Subramani A., DiMaggio P.A., and C.A. Floudas, "Selecting high quality protein structures from diverse conformational ensembles", Biophysical J., 97, 1728-1736 (2009).
  290. Verderame P.M. and C.A. Floudas, "Operational planning of large scale industrial batch plants under demand due date and amount uncertainty: II. Conditional value at risk framework", Industrial Engineering Chemistry Research, 49, 260-275 (2010).
  291. Ma J., Bellows M.L., and C.A. Floudas, "Recent advances in de novo protein design with rigid and flexible backbone templates", submitted for publication, (2009).
  292. Fung H.K., Bellows M.L., Floudas C.A., Zhang L., and Morikis D., "Redesigning complement 3a using templates from both X-ray crystallography and molecular dynamics", submitted for publication (2009).
  293. Fung H.K., Bellows M.L., Floudas C.A., Zubaidi M., Flores-Saaib R.D., Hsu M., Armstrong L.C., Kieslich C.A., Zhang L., and Morikis D., "De novo design of bioactive peptides for the C3a receptor", submitted for publication (2009).
  294. Baliban R.C., Elia J.A., and Floudas C.A., "Towards novel hybrid biomass and coal processes for satisfying transportation fuel demands", Proceedings of the 2nd Annual Gas Processing Symposium, Eds. F.T. Eljack, G.V. Reklaitis, M.M.El-Halwagi, Elsevier, in press (2010).
  295. Misener R., Gounaris C.E., and Floudas C.A., "Mathematical modeling and global optimization of large scale extended pooling proglems with the EPA complex emissions contraints", Computers and Chemical Engineering, 34, 1432-1456 (2010).
  296. Sun J., Abdeljabbar D.M., Clarke N., Bellows M.L., Floudas C.A., and A.J. Link, "Reconstitution and Engineering of Apoptotic Protein Interactions on the Bacterial Cell Surface", J. Molecular Biology, 394, 297-305 (2009).
  297. Yoon S.G., Park S., Lee J., Verderame P., and Floudas C.A., "Evaluation of synergy effect in the horizontal merger of companies in a petrochemical complex", Industrial and Engineering Chemistry Research, 48, 11017-11033.
  298. Li J., Susarla N., Shaik M.A., and Floudas C.A., "An analysis of some unit-specific event-based models for the short term scheduling of non-continuous processes", Industrial and Engineering Chemistry Research, 49, 633-647 (2010).
  299. Bellows M.L., and Floudas C.A., "Computational methods for de novo protein design and its applications to the human immunodeficiency virus 1, purine nucleoside phosphorylase, ubiquitin specific protease 7 and histone demethylases", Current Drug Targets, 11, 264-278 (2010).
  300. Misener R., Gounaris C.E., and Floudas C.A., "Global optimization and parametric analysis of large-scale extended pooling problems", Proceedings of 20th European Symposium on Computer Aided Process Engineering-ESCAPE20, Eds. S. Pierucci and G. Buzzzi Ferraris, submitted for publication (2009).
  301. Li J., and Floudas C.A., "Optimal event point determination for short term scheduling of multipurpose batch plants via unit-specific event-based continuous-time approaches", Industrial and Engineering Chemistry Research, 49, 7446-7469 (2010).
  302. Verderame P.M. and Floudas C.A., "Integration of operational planning and medium-term scheduling for large-scale industrial batch plants under demand and processing time uncertainty", Industrial and Engineering Chemistry Research, 49, 4948-4965 (2010).
  303. Verderame P.M., Elia J.A., Li J., and Floudas C.A., "Planning and scheduling under uncertainty: A review across multiple sectors", Industrial and Engineering Chemistry Research, 49, 3993-4017 (2010).
  304. Misener R. and Floudas C.A., "Global optimization of large-scale generaled pooling proglems: Quadratically constrained MINLP models", Industrial and Engineering Chemistry Research, 49, 5424-5438 (2010).
  305. Young N.L., Plazas-Mayorca M.D., DiMaggio P.A., Flaniken I.Z., Beltran A.J., Mishra N., LeRoy G., Floudas C.A., and Garcia B.A., "Collective mass spectrometry approaches reveal broad and combinatorial modification of high mobility group protein A1a", J. American Society for Mass Spectrometry, 21, 960-970 (2010).
  306. Baliban R.C., Elia J.A., and Floudas C.A., "Toward novel hybrid biomass, coal, and natural gas processes for satisfying current transportation fuel demands, 1: Process alternatives, gasification modeling, process simulation, and economic analysis", Industrial and Engineering Chemistry Research, 49, 7343-7370 (2010).
  307. Elia J.A., Baliban R.C., and Floudas C.A., "Toward novel hybrid biomass, coal, and natural gas processes for satisfying current transportation fuel demands, 2: Simultaneous heat and power integration", Industrial and Engineering Chemistry Research, 49, 7371-7388 (2010).

Patents

  1. Rabitz H.A., C.A. Floudas, and R.A. Yetter, "Adaptive Feedback Control Flow Reactor", United States Patent # 6,153,149, Nov. 28 (2000).
  2. Klepeis J.L. and C.A. Floudas, "Methods of Ab Initio Prediction of Alpha Helices, Beta Sheets, and Polypeptide Tertiary Structures", United States Patent # 6,832,162, Dec. 14 (2004).
  3. Lambris J.D., D. Morikis, and C.A. Floudas, "Compstatin Analogs Identified by Computer Modeling and Optimization", United States Patent Application, September 2002 (University of Pennsylvania, Princeton University, UC Riverside).
  4. Klepeis J.L. and C.A. Floudas, "In Silico Protein Discovery" United States Patent Application, May 2003 (Princeton University) (News)
  5. Janak S., Taylor M.S., Floudas C.A., Burka M. and T. Mountziaris, "A Novel and Effective Integer Optimization Approach for the NSF Panel Assignment Problem: A Mutli-Resource and Preference-Constrained Generalized Assignment Problem", September 2005.
  6. Gounaris C.E., Floudas C.A. and J. Wei, "Rational Design of Shape Selective Separation and Catalysis", December 2006.

Doctoral Theses

  1. "Synthesis and Analysis of Flexible and Complex Heat-Integrated Distillation Sequences", G. E. Paules IV, June 1990.
  2. "Global Optimum and Retrofit Issues in Heat Exchanger Network and Utility System Synthesis", A. R. Ciric, June 1990.
  3. "Synthesis and Analysis of General Distillation Sequences", A. Aggarwal, October 1990.
  4. "Synthesis and Optimization of Reactor Networks and Reactor-Separator-Recycle Systems", A. C. Kokossis, May 1992.
  5. "The Impact of Process Design and Model Uncertainty in the Dynamic Performance of Multivariable Time Delay Systems", Polycarpos Psarris, October 1992.
  6. "Analyzing the Interaction Between Process Design and Process Control", M. L. Luyben, June 1993.
  7. "Global Optimization of Nonconvex Nonlinear Problems", V. Visweswaran, May 1995.
  8. "Global Optimization for the Phase and Chemical Equilibrium Problem", C. M. McDonald, May 1995.
  9. "Global Optimization in Computational Chemistry and Process Systems Engineering", C. D. Maranas, May 1995.
  10. "Global Optimization Techniques for Process Systems Engineering", C. S. J. Adjiman, June 1998.
  11. "Process Synthesis, Design, and Control: Optimization with Dynamic Models and Discrete Decisions", C. A. Schweiger, June 1999.
  12. "Analysis and Design of Nonideal Distillation Processes", S. T. Harding, December 2000.
  13. "Global Optimization in the Estimation, Control, and Synthesis of Chemical Processes", W. R. Esposito Jr., April 2001.
  14. "Global Optimization in Protein Folding", J. L. Klepeis, April 2002.
  15. "Prediction of Peptide Binding to MHC Molecules via Molecular Modeling and Global Optimization", H. D. Schafroth, February 2003.
  16. "Scheduling, Planning, and Design of Chemical Processing Systems: Continuous-Time Approaches", X. Lin, April 2003.
  17. "Global Optimization for Bilevel Programming Problems and Applications", Z. H. Gumus, April 2003.
  18. "Convex Relaxations and Convex Envelopes for Deterministic Global Optimization", C. A. Meyer, February 2004.
  19. "Scheduling of Multiproduct and Multipurpose Batch Plants", S. L. Janak, January 2007.
  20. "Mathematical Optimization and Algorithmic Development for Protein Structure Prediction", S. R. McAllister, February 2008.
  21. "Computational De Novo Protein Design with Flexible Templates", H. K. Fung, October 2008.
  22. "Advances in Global Optimization and the Rational Design of Shape Selective Separations", C. E. Gounaris, October 2008.
  23. "Novel Optimization-based Methods of Studying Cellular Signaling Pathways", M. P. Tan, January 2009.
  24. "High Resolution Force Fields and Residue Contact Prediction Models for Protein Structure Prediction", R. Rajgaria, May 2009.
  25. "In Silico Methods for Discovery in Proteomics, Systems Biology, and Drug Discovery", P. A. DiMaggio, January 2010.